STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC114648988Growth arrest-specific protein 6-like. (413 aa)    
Predicted Functional Partners:
LOC114657276
FXYD domain-containing ion transport regulator 6-like.
    
  0.778
snw1
SNW domain containing 1.
    
  0.644
atp5pf
ATP synthase peripheral stalk subunit F6.
   
 
 0.603
LOC114667825
Phospholemman-like.
    
 0.570
LOC114667379
FXYD domain-containing ion transport regulator 3-like.
    
 0.570
atp8b2
ATPase phospholipid transporting 8B2.
    
  0.545
atp10d
ATPase phospholipid transporting 10D (putative).
    
  0.545
atp8b1
ATPase phospholipid transporting 8B1.
    
  0.545
atp8a1
ATPase phospholipid transporting 8A1.
    
  0.545
LOC114650068
Probable phospholipid-transporting ATPase IH.
    
  0.545
Your Current Organism:
Erpetoichthys calabaricus
NCBI taxonomy Id: 27687
Other names: Calamoichthys calabaricus, E. calabaricus, reedfish
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.