STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ybx2Y-box binding protein 2. (345 aa)    
Predicted Functional Partners:
sympk
Symplekin.
    
 0.898
lsm14a
LSM14A mRNA processing body assembly factor.
   
 0.884
lsm14b
LSM family member 14B.
   
 0.884
tjp1
Tight junction protein 1.
    
 0.881
dhx9
DExH-box helicase 9.
  
 0.874
LOC114667281
Cytoplasmic polyadenylation element-binding protein 1-B-like.
   
 0.854
snrpd3
Small nuclear ribonucleoprotein D3 polypeptide.
   
 0.848
syncrip
Synaptotagmin binding cytoplasmic RNA interacting protein.
   
 0.844
hnrnpr
Heterogeneous nuclear ribonucleoprotein R.
   
 0.844
sf3b1
Splicing factor 3b subunit 1.
    
  0.820
Your Current Organism:
Erpetoichthys calabaricus
NCBI taxonomy Id: 27687
Other names: Calamoichthys calabaricus, E. calabaricus, reedfish
Server load: low (24%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.