STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
vegfbVascular endothelial growth factor B. (211 aa)    
Predicted Functional Partners:
adgrl3
Adhesion G protein-coupled receptor L3.
    
 
 0.992
adgrl2
Adhesion G protein-coupled receptor L2.
    
 
 0.992
LOC114668254
Adhesion G protein-coupled receptor L1-like.
    
 
 0.992
ENSECRP00000031034
annotation not available
    
 
 0.992
ENSECRP00000031052
annotation not available
    
 
 0.992
flt1
Fms related tyrosine kinase 1.
    
 0.952
pdgfrb
Platelet derived growth factor receptor beta.
    
 0.930
vegfc
Vascular endothelial growth factor C.
    
0.926
flt3
Fms related tyrosine kinase 3.
    
 0.920
pdgfra
Platelet derived growth factor receptor alpha.
    
 0.920
Your Current Organism:
Erpetoichthys calabaricus
NCBI taxonomy Id: 27687
Other names: Calamoichthys calabaricus, E. calabaricus, reedfish
Server load: low (22%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.