STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
rbfox2RNA binding fox-1 homolog 2. (452 aa)    
Predicted Functional Partners:
rbm38
RNA binding motif protein 38.
  
 
 0.795
rbm24
RNA binding motif protein 24.
  
 
0.732
srsf2
Serine and arginine rich splicing factor 2.
  
  
0.659
LOC114664541
Protein quaking-A.
   
 
 0.656
qki
QKI, KH domain containing RNA binding.
   
 
 0.656
hnrnph3
Heterogeneous nuclear ribonucleoprotein H3.
    
 0.550
hnrnph1
Heterogeneous nuclear ribonucleoprotein H1.
    
 0.550
elavl1
ELAV like RNA binding protein 1.
  
 
 
 0.548
gpatch8
G-patch domain containing 8.
    
 0.547
LOC114654123
ELAV-like protein 2.
  
 
 
 0.519
Your Current Organism:
Erpetoichthys calabaricus
NCBI taxonomy Id: 27687
Other names: Calamoichthys calabaricus, E. calabaricus, reedfish
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.