STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
rnf25Ring finger protein 25. (586 aa)    
Predicted Functional Partners:
LOC114649931
Ubiquitin-conjugating enzyme E2 D4.
    
 
 0.639
ube2d1
Ubiquitin conjugating enzyme E2 D1.
    
 
 0.639
ube2d3
Ubiquitin conjugating enzyme E2 D3.
    
 
 0.639
LOC114642192
Ubiquitin-conjugating enzyme E2 D2.
    
 
 0.639
ENSECRP00000029137
annotation not available
    
 
 0.639
LOC114665675
Ubiquitin-conjugating enzyme E2 D4-like.
    
 
 0.627
ube2t
Ubiquitin conjugating enzyme E2 T.
    
 
 0.604
ube2n
Ubiquitin conjugating enzyme E2 N.
    
 
 0.600
ube2e3
Ubiquitin conjugating enzyme E2 E3.
    
 
 0.589
ube2e1
Ubiquitin conjugating enzyme E2 E1.
    
 
 0.589
Your Current Organism:
Erpetoichthys calabaricus
NCBI taxonomy Id: 27687
Other names: Calamoichthys calabaricus, E. calabaricus, reedfish
Server load: low (24%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.