STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
trmt10atRNA methyltransferase 10A. (339 aa)    
Predicted Functional Partners:
hsd17b10
Hydroxysteroid 17-beta dehydrogenase 10.
    
 0.951
wdr4
WD repeat domain 4.
   
 0.930
trmt6
tRNA methyltransferase 6.
   
 
 0.885
mettl1
Methyltransferase like 1.
   
 0.859
trmt61a
tRNA methyltransferase 61A.
   
 0.795
rpp30
Ribonuclease P/MRP subunit p30.
   
 
  0.778
timm22
Translocase of inner mitochondrial membrane 22.
   
 
  0.778
timm29
Translocase of inner mitochondrial membrane 29.
   
 
  0.778
timm9
Translocase of inner mitochondrial membrane 9.
   
 
  0.769
prorp
Protein only RNase P catalytic subunit.
   
 0.766
Your Current Organism:
Erpetoichthys calabaricus
NCBI taxonomy Id: 27687
Other names: Calamoichthys calabaricus, E. calabaricus, reedfish
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.