STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ctdnep1CTD nuclear envelope phosphatase 1. (245 aa)    
Predicted Functional Partners:
cnep1r1
CTD nuclear envelope phosphatase 1 regulatory subunit 1.
   
 0.991
lpin2
Lipin 2.
    
 0.931
lpin1
Lipin 1.
    
 0.931
LOC114659547
Phosphatidate phosphatase LPIN3-like.
    
 0.931
gtf2f1
General transcription factor IIF subunit 1.
    
 0.909
timm23
Translocase of inner mitochondrial membrane 23.
    
 0.849
polr2g
RNA polymerase II subunit G.
    
 0.844
timm21
Translocase of inner mitochondrial membrane 21.
    
 0.809
gtf2f2
General transcription factor IIF subunit 2.
    
 0.804
polr2d
RNA polymerase II subunit D.
    
 0.801
Your Current Organism:
Erpetoichthys calabaricus
NCBI taxonomy Id: 27687
Other names: Calamoichthys calabaricus, E. calabaricus, reedfish
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.