STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
scfd2Sec1 family domain containing 2. (539 aa)    
Predicted Functional Partners:
zw10
Zw10 kinetochore protein.
    
 
 0.805
rint1
RAD50 interactor 1.
   
 
 0.793
stx18
Syntaxin 18.
    
 
 0.782
vps11
VPS11 core subunit of CORVET and HOPS complexes.
   
 
  0.779
nbas
NBAS subunit of NRZ tethering complex.
    
 
 0.767
vps33b
VPS33B late endosome and lysosome associated.
   
 
  0.741
vps33a
VPS33A core subunit of CORVET and HOPS complexes.
   
 
  0.731
scfd1
Sec1 family domain containing 1.
    
 
 0.725
use1
Unconventional SNARE in the ER 1.
   
   0.684
napg
NSF attachment protein gamma.
    
   0.608
Your Current Organism:
Erpetoichthys calabaricus
NCBI taxonomy Id: 27687
Other names: Calamoichthys calabaricus, E. calabaricus, reedfish
Server load: low (30%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.