STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC114649165Sodium channel protein type 8 subunit alpha-like. (1972 aa)    
Predicted Functional Partners:
unc79
Unc-79 homolog, NALCN channel complex subunit.
   
 0.997
scn1b
Sodium voltage-gated channel beta subunit 1.
   
 0.991
scn2b
Sodium voltage-gated channel beta subunit 2.
   
 0.990
scn3b
Sodium voltage-gated channel beta subunit 3.
    
 0.974
LOC114664762
Sodium channel protein type 4 subunit alpha A-like.
  
 
0.962
LOC114655412
Sodium channel protein type 2 subunit alpha-like.
  
 
 
0.934
LOC114653135
Sodium channel protein type 4 subunit alpha-like.
  
  
 
0.933
scn4b
Sodium voltage-gated channel beta subunit 4.
    
 0.904
cacng1
Calcium voltage-gated channel auxiliary subunit gamma 1.
   
 0.821
wdr35
WD repeat domain 35.
    
 0.809
Your Current Organism:
Erpetoichthys calabaricus
NCBI taxonomy Id: 27687
Other names: Calamoichthys calabaricus, E. calabaricus, reedfish
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.