STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
slc11a2Solute carrier family 11 member 2. (562 aa)    
Predicted Functional Partners:
ndfip1
Nedd4 family interacting protein 1.
   
 
 0.731
ndfip2
Nedd4 family interacting protein 2.
   
 
 0.731
rpl15
Ribosomal protein L15.
    
  0.731
catip
Ciliogenesis associated TTC17 interacting protein.
     
 0.714
fech
Ferrochelatase.
  
  
 0.687
slc30a9
Solute carrier family 30 member 9.
   
 
 0.663
ccs
Copper chaperone for superoxide dismutase.
     
 0.604
abcf3
ATP binding cassette subfamily F member 3.
     
 0.601
atp6v0c
ATPase H+ transporting V0 subunit c.
   
 0.593
sod2
Superoxide dismutase 2.
     
 0.588
Your Current Organism:
Erpetoichthys calabaricus
NCBI taxonomy Id: 27687
Other names: Calamoichthys calabaricus, E. calabaricus, reedfish
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.