STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
marchf9Membrane associated ring-CH-type finger 9. (337 aa)    
Predicted Functional Partners:
cnot2
CCR4-NOT transcription complex subunit 2.
    
 0.740
ube2g2
Ubiquitin conjugating enzyme E2 G2.
    
 0.661
ubxn8
UBX domain protein 8.
    
 0.628
faf1
Fas associated factor 1.
    
 0.628
faf2
Fas associated factor family member 2.
    
 0.628
ufd1
Ubiquitin recognition factor in ER associated degradation 1.
    
 0.569
znf593
Zinc finger protein 593.
      
 0.554
spata5
Spermatogenesis associated 5.
    
 0.548
vcp
Valosin containing protein.
    
 0.548
LOC114667386
Transitional endoplasmic reticulum ATPase-like.
    
 0.548
Your Current Organism:
Erpetoichthys calabaricus
NCBI taxonomy Id: 27687
Other names: Calamoichthys calabaricus, E. calabaricus, reedfish
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.