LOC114660357 protein (Erpetoichthys calabaricus)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

LOC114660357

Protocadherin alpha-7-like. (1059 aa)

Predicted Functional Partners:

fjx1

0.575

LOC114648014

0.480

uck2

0.480

uck1

0.480

ctnnb1

0.480

jup

0.480

uckl1

0.480

ENSECRP00000023353

0.479

myo9a

0.479

ENSECRP00000002782

0.468

Your Current Organism:

Erpetoichthys calabaricus

NCBI taxonomy Id: 27687
Other names: Calamoichthys calabaricus, E. calabaricus, reedfish

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSECRP00000002782	LOC114660357	ENSECRP00000002782	ENSECRP00000016762	annotation not available	Protocadherin alpha-7-like.	0.468
ENSECRP00000002782	fjx1	ENSECRP00000002782	ENSECRP00000000881	annotation not available	Four-jointed box kinase 1.	0.935
ENSECRP00000023353	LOC114648014	ENSECRP00000023353	ENSECRP00000009065	annotation not available	Uridine-cytidine kinase-like 1.	0.568
ENSECRP00000023353	LOC114660357	ENSECRP00000023353	ENSECRP00000016762	annotation not available	Protocadherin alpha-7-like.	0.479
ENSECRP00000023353	ctnnb1	ENSECRP00000023353	ENSECRP00000025072	annotation not available	Catenin beta 1.	0.568
ENSECRP00000023353	jup	ENSECRP00000023353	ENSECRP00000029116	annotation not available	Junction plakoglobin.	0.568
ENSECRP00000023353	uck1	ENSECRP00000023353	ENSECRP00000013448	annotation not available	Uridine-cytidine kinase 1.	0.568
ENSECRP00000023353	uck2	ENSECRP00000023353	ENSECRP00000011469	annotation not available	Uridine-cytidine kinase 2.	0.568
ENSECRP00000023353	uckl1	ENSECRP00000023353	ENSECRP00000033942	annotation not available	Uridine-cytidine kinase 1 like 1.	0.568
LOC114648014	ENSECRP00000023353	ENSECRP00000009065	ENSECRP00000023353	Uridine-cytidine kinase-like 1.	annotation not available	0.568
LOC114648014	LOC114660357	ENSECRP00000009065	ENSECRP00000016762	Uridine-cytidine kinase-like 1.	Protocadherin alpha-7-like.	0.480
LOC114648014	myo9a	ENSECRP00000009065	ENSECRP00000030073	Uridine-cytidine kinase-like 1.	Myosin IXA.	0.568
LOC114648014	uck1	ENSECRP00000009065	ENSECRP00000013448	Uridine-cytidine kinase-like 1.	Uridine-cytidine kinase 1.	0.837
LOC114648014	uck2	ENSECRP00000009065	ENSECRP00000011469	Uridine-cytidine kinase-like 1.	Uridine-cytidine kinase 2.	0.839
LOC114660357	ENSECRP00000002782	ENSECRP00000016762	ENSECRP00000002782	Protocadherin alpha-7-like.	annotation not available	0.468
LOC114660357	ENSECRP00000023353	ENSECRP00000016762	ENSECRP00000023353	Protocadherin alpha-7-like.	annotation not available	0.479
LOC114660357	LOC114648014	ENSECRP00000016762	ENSECRP00000009065	Protocadherin alpha-7-like.	Uridine-cytidine kinase-like 1.	0.480
LOC114660357	ctnnb1	ENSECRP00000016762	ENSECRP00000025072	Protocadherin alpha-7-like.	Catenin beta 1.	0.480
LOC114660357	fjx1	ENSECRP00000016762	ENSECRP00000000881	Protocadherin alpha-7-like.	Four-jointed box kinase 1.	0.575
LOC114660357	jup	ENSECRP00000016762	ENSECRP00000029116	Protocadherin alpha-7-like.	Junction plakoglobin.	0.480

page 1 of 3

Network Stats

number of nodes:

11

number of edges:

34

average node degree:

6.18

avg. local clustering coefficient:

0.915

expected number of edges:

10

PPI enrichment p-value:

2.83e-09

your network has significantly more interactions
than expected (what does that mean?)

Functional enrichments in your networkNote: some enrichments may be expected here (why?)
disable highlight explain columns

Biological Process (Gene Ontology)

GO-term

description

count in network

strength

signal

false discovery rate

GO:0051382

Kinetochore assembly

3 of 12

2.72

1.93

0.00029

GO:0007059

Chromosome segregation

5 of 220

1.68

1.59

0.00029

GO:0000712

Resolution of meiotic recombination intermediates

2 of 17

2.4

0.87

0.0257

GO:0036297

Interstrand cross-link repair

2 of 25

2.23

0.81

0.0327

GO:0031297

Replication fork processing

2 of 29

2.16

0.78

0.0359

(more ...)

Molecular Function (Gene Ontology)

GO-term

description

count in network

strength

signal

false discovery rate

GO:0080122

AMP transmembrane transporter activity

2 of 4

3.02

1.16

0.0082

GO:0015228

Coenzyme A transmembrane transporter activity

2 of 4

3.02

1.16

0.0082

GO:0043262

Adenosine-diphosphatase activity

2 of 7

2.78

1.15

0.0082

GO:0015217

ADP transmembrane transporter activity

2 of 9

2.67

1.15

0.0082

GO:0005347

ATP transmembrane transporter activity

2 of 16

2.42

1.01

0.0140

Cellular Component (Gene Ontology)

GO-term

description

count in network

strength

signal

false discovery rate

GO:0000775

Chromosome, centromeric region

5 of 150

1.85

2.32

7.01e-06

GO:0071821

FANCM-MHF complex

2 of 5

2.93

1.58

0.0014

GO:0043240

Fanconi anaemia nuclear complex

2 of 9

2.67

1.4

0.0028

GO:0000776

Kinetochore

3 of 101

1.8

1.24

0.0030

GO:0005694

Chromosome

6 of 900

1.15

1.03

0.00057

Local Network Cluster (STRING)

cluster

description

count in network

strength

signal

false discovery rate

CL:4083

Centromere complex assembly, and AMP transport

7 of 16

2.97

8.07

5.63e-16

CL:4087

Centromere complex assembly, and Inner kinetochore

6 of 11

3.06

7.34

2.20e-14

CL:4090

Centromere complex assembly, and Inner kinetochore

3 of 6

3.02

3.0

3.36e-06

CL:2471

Fanconi anaemia nuclear complex, and CENP-S protein

2 of 12

2.55

1.13

0.0085

CL:2198

DNA replication, and Fanconi anemia pathway

3 of 165

1.58

0.8

0.0229

KEGG Pathways

pathway

description

count in network

strength

signal

false discovery rate

sdu03460

Fanconi anemia pathway

2 of 46

1.96

0.76

0.0376

Reactome Pathways

pathway

description

count in network

strength

signal

false discovery rate

MAP-774815

Nucleosome assembly

5 of 62

2.23

3.39

1.30e-07

MAP-606279

Deposition of new CENPA-containing nucleosomes at the centromere

5 of 62

2.23

3.39

1.30e-07

MAP-73886

Chromosome Maintenance

5 of 129

1.91

2.64

1.47e-06

MAP-499943

Interconversion of nucleotide di- and triphosphates

3 of 43

2.17

1.72

0.00049

MAP-141444

Amplification of signal from unattached kinetochores via a MAD2 inhibitory signal

3 of 108

1.77

1.11

0.0057

(more ...)

Subcellular Localization (COMPARTMENTS)

compartment

description

count in network

strength

signal

false discovery rate

GOCC:0071821

FANCM-MHF complex

2 of 5

2.93

1.44

0.0025

GOCC:0000779

Condensed chromosome, centromeric region

3 of 48

2.12

1.36

0.0025

GOCC:0000776

Kinetochore

3 of 54

2.07

1.35

0.0025

Enrichment display settings

Enrichment analysis is still ongoing, please wait ...

Server load: low (20%) [HD]

Permalink

Credits

Access

Info

About

STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.

Network

Fusion

Experiments

Cooccurrence

Databases

Coexpression

Textmining

Neighborhood

© STRING Consortium 2024

Credits

Access

Info

About