STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
snx8Sorting nexin 8. (533 aa)    
Predicted Functional Partners:
vps35
VPS35 retromer complex component.
   
 0.989
vps29
VPS29 retromer complex component.
   
 0.987
ENSECRP00000001571
annotation not available
    
 0.981
gak
Cyclin G associated kinase.
    
 0.981
vps26a
VPS26, retromer complex component A.
    
 0.980
vps26b
VPS26, retromer complex component B.
    
 0.979
msh3
mutS homolog 3.
    
   0.956
ankfy1
Ankyrin repeat and FYVE domain containing 1.
    
 0.952
snx27
Sorting nexin 27.
   
 0.945
snx5
Sorting nexin 5.
   
 0.927
Your Current Organism:
Erpetoichthys calabaricus
NCBI taxonomy Id: 27687
Other names: Calamoichthys calabaricus, E. calabaricus, reedfish
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.