STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
fam126aFamily with sequence similarity 126 member A. (518 aa)    
Predicted Functional Partners:
pi4ka
Phosphatidylinositol 4-kinase alpha.
    
 
 0.918
ttc7b
Tetratricopeptide repeat domain 7B.
    
 
 0.884
ttc7a
Tetratricopeptide repeat domain 7A.
    
 
 0.860
efr3a
EFR3 homolog A.
      
 0.558
aimp1
Aminoacyl tRNA synthetase complex interacting multifunctional protein 1.
      
 0.554
zcchc24
Zinc finger CCHC-type containing 24.
      
 0.523
ENSECRP00000016497
annotation not available
      
 0.493
efr3b
EFR3 homolog B.
      
 0.483
tmem150a
Transmembrane protein 150A.
      
 0.461
shpk
Sedoheptulokinase.
    
   0.453
Your Current Organism:
Erpetoichthys calabaricus
NCBI taxonomy Id: 27687
Other names: Calamoichthys calabaricus, E. calabaricus, reedfish
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.