STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
pabpc4poly(A) binding protein cytoplasmic 4. (606 aa)    
Predicted Functional Partners:
pan3
poly(A) specific ribonuclease subunit PAN3.
    
 0.931
pan2
poly(A) specific ribonuclease subunit PAN2.
    
 0.925
paip1
poly(A) binding protein interacting protein 1.
   
 0.913
ncbp2
Nuclear cap binding protein subunit 2.
   
 0.892
eif4g1
Eukaryotic translation initiation factor 4 gamma 1.
   
 0.877
eif4g3
Eukaryotic translation initiation factor 4 gamma 3.
   
 0.877
ncbp1
Nuclear cap binding protein subunit 1.
    
 0.875
eif4g2
Eukaryotic translation initiation factor 4 gamma 2.
   
 0.870
eftud2
Elongation factor Tu GTP binding domain containing 2.
   
 0.851
upf1
UPF1 RNA helicase and ATPase.
    
 0.845
Your Current Organism:
Erpetoichthys calabaricus
NCBI taxonomy Id: 27687
Other names: Calamoichthys calabaricus, E. calabaricus, reedfish
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.