STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
arhgef12Rho guanine nucleotide exchange factor 12. (1514 aa)    
Predicted Functional Partners:
gna12
G protein subunit alpha 12.
    
 0.943
gna13
G protein subunit alpha 13.
    
 0.943
hras
HRas proto-oncogene, GTPase.
    
  0.888
rras2
RAS related 2.
    
  0.888
LOC114660716
Ras-related protein R-Ras2-like.
    
  0.888
mras
Muscle RAS oncogene homolog.
    
  0.888
nras
NRAS proto-oncogene, GTPase.
    
  0.886
rhob
Ras homolog family member B.
   
 0.875
ENSECRP00000002180
annotation not available
   
 0.875
LOC114648818
Rho-related GTP-binding protein RhoA-D.
   
 0.875
Your Current Organism:
Erpetoichthys calabaricus
NCBI taxonomy Id: 27687
Other names: Calamoichthys calabaricus, E. calabaricus, reedfish
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