STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC114662491Nuclear pore glycoprotein p62-like. (570 aa)    
Predicted Functional Partners:
nup54
Nucleoporin 54.
   
 0.999
LOC114650950
E3 SUMO-protein ligase RanBP2-like.
   
 0.999
nup93
Nucleoporin 93.
   
 0.997
ENSECRP00000012322
annotation not available
   
 0.995
nup214
Nucleoporin 214.
   
 0.994
nup98
Nucleoporin 98.
   
 0.992
nup35
Nucleoporin 35.
    
 0.991
nup88
Nucleoporin 88.
    
 0.991
sec13
SEC13 homolog, nuclear pore and COPII coat complex component.
    
 0.989
nup107
Nucleoporin 107.
   
 0.985
Your Current Organism:
Erpetoichthys calabaricus
NCBI taxonomy Id: 27687
Other names: Calamoichthys calabaricus, E. calabaricus, reedfish
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