STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ppp1r16bProtein phosphatase 1 regulatory subunit 16B. (544 aa)    
Predicted Functional Partners:
LOC114652730
Serine/threonine-protein phosphatase PP1-beta catalytic subunit-like.
  
 0.800
ppp1cb
Protein phosphatase 1 catalytic subunit beta.
  
 0.800
ppp1ca
Protein phosphatase 1 catalytic subunit alpha.
  
 0.779
LOC114661600
Serine/threonine-protein phosphatase alpha-2 isoform-like.
  
 0.779
ppp1cc
Protein phosphatase 1 catalytic subunit gamma.
  
 0.779
ppp1r14a
Protein phosphatase 1 regulatory inhibitor subunit 14A.
     
 0.679
mars1
methionyl-tRNA synthetase 1.
   
 0.624
leo1
LEO1 homolog, Paf1/RNA polymerase II complex component.
    
 0.621
ppp1r7
Protein phosphatase 1 regulatory subunit 7.
   
 
 0.593
LOC114653424
Myosin regulatory light chain 2, smooth muscle minor isoform.
    
 0.579
Your Current Organism:
Erpetoichthys calabaricus
NCBI taxonomy Id: 27687
Other names: Calamoichthys calabaricus, E. calabaricus, reedfish
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.