STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
tbl1xr1Transducin beta like 1 X-linked receptor 1. (533 aa)    
Predicted Functional Partners:
kmt2e
Lysine methyltransferase 2E.
    
 0.975
ctnnb1
Catenin beta 1.
  
 0.944
ENSECRP00000013617
annotation not available
   
 0.926
ENSECRP00000013662
annotation not available
   
 0.926
ncor2
Nuclear receptor corepressor 2.
   
 0.926
hdac3
Histone deacetylase 3.
   
 0.916
phf20
PHD finger protein 20.
    
 0.904
ENSECRP00000033887
annotation not available
    
 0.904
sirt1
Sirtuin 1.
   
 0.892
hdac2
Histone deacetylase 2.
   
 0.887
Your Current Organism:
Erpetoichthys calabaricus
NCBI taxonomy Id: 27687
Other names: Calamoichthys calabaricus, E. calabaricus, reedfish
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.