STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
arhgef38Rho guanine nucleotide exchange factor 38. (748 aa)    
Predicted Functional Partners:
amph
Amphiphysin.
    
 
 0.781
bin2
Bridging integrator 2.
    
 
 0.781
bin1
Bridging integrator 1.
    
 
 0.781
sh3pxd2a
SH3 and PX domains 2A.
    
 0.748
ncf4
Neutrophil cytosolic factor 4.
    
 0.748
sh3pxd2b
SH3 and PX domains 2B.
    
 0.748
ncf1
Neutrophil cytosolic factor 1.
    
 0.748
noxo1
NADPH oxidase organizer 1.
    
 0.748
cdc42
Cell division cycle 42.
    
 0.741
LOC114658015
Cell division control protein 42 homolog.
    
 0.714
Your Current Organism:
Erpetoichthys calabaricus
NCBI taxonomy Id: 27687
Other names: Calamoichthys calabaricus, E. calabaricus, reedfish
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.