STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ccdc47Coiled-coil domain containing 47. (486 aa)    
Predicted Functional Partners:
wdr83os
WD repeat domain 83 opposite strand.
    
 0.989
tmco1
Transmembrane and coiled-coil domains 1.
    
 
 0.957
ncln
Nicalin.
    
 
 0.957
med1
Mediator complex subunit 1.
    
  0.956
LOC114669332
T-complex protein 1 subunit beta-like.
     
 0.946
dnajb11
DnaJ heat shock protein family (Hsp40) member B11.
    
 0.944
spag1
Sperm associated antigen 1.
    
  0.940
cct5
Chaperonin containing TCP1 subunit 5.
     
 0.938
bag3
BCL2 associated athanogene 3.
    
  0.938
dnajc9
DnaJ heat shock protein family (Hsp40) member C9.
    
  0.937
Your Current Organism:
Erpetoichthys calabaricus
NCBI taxonomy Id: 27687
Other names: Calamoichthys calabaricus, E. calabaricus, reedfish
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.