STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
znf598Zinc finger protein 598. (903 aa)    
Predicted Functional Partners:
rps3
Ribosomal protein S3.
    
 
 0.818
ascc3
Activating signal cointegrator 1 complex subunit 3.
    
 
 0.766
ENSECRP00000012883
annotation not available
    
 
 0.749
ltn1
Listerin E3 ubiquitin protein ligase 1.
    
 
 0.738
u2af2
U2 small nuclear RNA auxiliary factor 2.
   
    0.713
rps20
Ribosomal protein S20.
    
 
 0.707
rack1
Receptor for activated C kinase 1.
    
 
 0.699
rps10
Ribosomal protein S10.
    
 
 0.691
gcn1
GCN1 activator of EIF2AK4.
    
 
 0.669
hbs1l
HBS1 like translational GTPase.
    
 
 0.637
Your Current Organism:
Erpetoichthys calabaricus
NCBI taxonomy Id: 27687
Other names: Calamoichthys calabaricus, E. calabaricus, reedfish
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.