STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
tgfbiTransforming growth factor beta induced. (674 aa)    
Predicted Functional Partners:
LOC114667105
NADH dehydrogenase [ubiquinone] iron-sulfur protein 2, mitochondrial-like.
    
 
 0.938
pts
6-pyruvoyltetrahydropterin synthase.
    
  0.770
mre11
MRE11 homolog, double strand break repair nuclease.
    
 0.731
ndufs8
NADH:ubiquinone oxidoreductase core subunit S8.
    
 
 0.712
LOC114665637
Heme-binding protein 1-like.
    
 0.679
ndufs3
NADH:ubiquinone oxidoreductase core subunit S3.
    
   0.627
gbe1
1,4-alpha-glucan branching enzyme 1.
    
 0.604
dnajc10
DnaJ heat shock protein family (Hsp40) member C10.
    
 0.585
pwwp3a
PWWP domain containing 3A, DNA repair factor.
    
   0.577
ENSECRP00000033664
annotation not available
    
   0.577
Your Current Organism:
Erpetoichthys calabaricus
NCBI taxonomy Id: 27687
Other names: Calamoichthys calabaricus, E. calabaricus, reedfish
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