STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC114661795Zinc finger protein 646-like. (1902 aa)    
Predicted Functional Partners:
ENSECRP00000011256
annotation not available
    
  0.603
pald1
Phosphatase domain containing paladin 1.
      
 0.574
shisa2
Shisa family member 2.
      
 0.555
slitrk6
SLIT and NTRK like family member 6.
    
 
 0.550
ENSECRP00000005558
annotation not available
    
 
 0.534
ENSECRP00000000849
annotation not available
    
  0.527
svep1
Sushi, von Willebrand factor type A, EGF and pentraxin domain containing 1.
    
 0.482
ythdc2
YTH domain containing 2.
    
  0.443
spopl
Speckle type BTB/POZ protein like.
   
  0.443
gtf3c3
General transcription factor IIIC subunit 3.
    
  0.443
Your Current Organism:
Erpetoichthys calabaricus
NCBI taxonomy Id: 27687
Other names: Calamoichthys calabaricus, E. calabaricus, reedfish
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.