STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC114662337Ras-related protein Rab-38-like. (220 aa)    
Predicted Functional Partners:
rabggta
Rab geranylgeranyltransferase subunit alpha.
    
 0.811
ENSECRP00000032464
annotation not available
    
 
 0.793
LOC114662096
Rab proteins geranylgeranyltransferase component A 2-like.
    
 0.779
ENSECRP00000001571
annotation not available
    
 
 0.766
gak
Cyclin G associated kinase.
    
 
 0.766
ptar1
Protein prenyltransferase alpha subunit repeat containing 1.
    
 0.677
gdi2
GDP dissociation inhibitor 2.
    
 0.672
LOC114660500
Rab GDP dissociation inhibitor alpha-like.
    
 0.672
hps1
HPS1 biogenesis of lysosomal organelles complex 3 subunit 1.
     
 0.631
hps4
HPS4 biogenesis of lysosomal organelles complex 3 subunit 2.
     
 0.630
Your Current Organism:
Erpetoichthys calabaricus
NCBI taxonomy Id: 27687
Other names: Calamoichthys calabaricus, E. calabaricus, reedfish
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.