STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
pudpPseudouridine 5'-phosphatase. (231 aa)    
Predicted Functional Partners:
pgghg
Protein-glucosylgalactosylhydroxylysine glucosidase.
  
 
 0.961
agxt
Alanine--glyoxylate and serine--pyruvate aminotransferase.
    
 0.952
gpi
Glucose-6-phosphate isomerase.
  
 
 0.949
gbe1
1,4-alpha-glucan branching enzyme 1.
  
 
 0.940
flad1
Flavin adenine dinucleotide synthetase 1.
    
 0.921
yipf6
Yip1 domain family member 6.
    
 0.918
mpi
Mannose phosphate isomerase.
   
 0.918
ENSECRP00000004184
annotation not available
  
 0.906
pmm1
Phosphomannomutase 1.
  
 
 0.906
pmm2
Phosphomannomutase 2.
  
 
 0.906
Your Current Organism:
Erpetoichthys calabaricus
NCBI taxonomy Id: 27687
Other names: Calamoichthys calabaricus, E. calabaricus, reedfish
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.