STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
crb1Crumbs cell polarity complex component 1. (1374 aa)    
Predicted Functional Partners:
mpp5
Membrane palmitoylated protein 5.
    
 0.905
arid4a
AT-rich interaction domain 4A.
    
 0.715
arid4b
AT-rich interaction domain 4B.
    
 0.715
ENSECRP00000011256
annotation not available
   
  0.699
mysm1
Myb like, SWIRM and MPN domains 1.
    
 0.664
leo1
LEO1 homolog, Paf1/RNA polymerase II complex component.
    
  0.663
patj
PATJ crumbs cell polarity complex component.
    
 0.638
mpdz
Multiple PDZ domain crumbs cell polarity complex component.
    
 0.638
ENSECRP00000016790
annotation not available
    
 0.638
rbpj
Recombination signal binding protein for immunoglobulin kappa J region.
    
 0.627
Your Current Organism:
Erpetoichthys calabaricus
NCBI taxonomy Id: 27687
Other names: Calamoichthys calabaricus, E. calabaricus, reedfish
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.