STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
hdac9Histone deacetylase 9. (602 aa)    
Predicted Functional Partners:
arid4a
AT-rich interaction domain 4A.
    
 0.968
arid4b
AT-rich interaction domain 4B.
    
 0.968
ENSECRP00000022354
annotation not available
 
    
 0.902
ENSECRP00000017879
annotation not available
 
      0.899
ENSECRP00000016153
annotation not available
    
 0.882
kdm2a
Lysine demethylase 2A.
    
 0.834
fbxl19
F-box and leucine rich repeat protein 19.
    
 0.834
kdm2b
Lysine demethylase 2B.
    
 0.834
sin3b
SIN3 transcription regulator family member B.
    
 0.815
sin3a
SIN3 transcription regulator family member A.
    
 0.815
Your Current Organism:
Erpetoichthys calabaricus
NCBI taxonomy Id: 27687
Other names: Calamoichthys calabaricus, E. calabaricus, reedfish
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.