STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
slc4a4Solute carrier family 4 member 4. (1085 aa)    
Predicted Functional Partners:
slc26a6
Solute carrier family 26 member 6.
     
 0.614
kank1
KN motif and ankyrin repeat domains 1.
    
 0.603
ENSECRP00000021661
annotation not available
    
 0.580
arhgap1
Rho GTPase activating protein 1.
     
 0.562
elmo1
Engulfment and cell motility 1.
      
 0.560
slc26a9
Solute carrier family 26 member 9.
     
 0.549
slc26a4
Solute carrier family 26 member 4.
     
 0.548
ripk4
Receptor interacting serine/threonine kinase 4.
    
 0.511
met
MET proto-oncogene, receptor tyrosine kinase.
    
  0.505
ENSECRP00000022943
annotation not available
    
  0.505
Your Current Organism:
Erpetoichthys calabaricus
NCBI taxonomy Id: 27687
Other names: Calamoichthys calabaricus, E. calabaricus, reedfish
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.