STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC114664370Splicing factor, proline- and glutamine-rich-like. (416 aa)    
Predicted Functional Partners:
hnrnpm
Heterogeneous nuclear ribonucleoprotein M.
   
 
 0.580
nudt21
Nudix hydrolase 21.
   
 
 0.514
fyn
FYN proto-oncogene, Src family tyrosine kinase.
    
  0.507
LOC114659291
Tyrosine-protein kinase SRK2-like.
    
  0.507
LOC114659292
Protein-tyrosine kinase 6-like.
    
  0.507
fgr
FGR proto-oncogene, Src family tyrosine kinase.
    
  0.507
LOC114652895
RNA-binding protein 4.1-like.
   
 
0.490
ewsr1
EWS RNA binding protein 1.
   
 
 0.449
LOC114649390
Tyrosine-protein kinase FRK-like.
    
  0.446
blk
BLK proto-oncogene, Src family tyrosine kinase.
    
  0.446
Your Current Organism:
Erpetoichthys calabaricus
NCBI taxonomy Id: 27687
Other names: Calamoichthys calabaricus, E. calabaricus, reedfish
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.