ENSECRP00000018132 protein (Erpetoichthys calabaricus)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

ENSECRP00000018132

annotation not available (127 aa)

Predicted Functional Partners:

LOC114642709

0.917

snx14

0.624

ENSECRP00000027282

0.577

ykt6

0.539

snx3

0.528

snx12

0.528

stx8

0.501

stx6

0.485

stx10

0.485

ankmy2

0.462

Your Current Organism:

Erpetoichthys calabaricus

NCBI taxonomy Id: 27687
Other names: Calamoichthys calabaricus, E. calabaricus, reedfish

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSECRP00000018132	ENSECRP00000027282	ENSECRP00000018132	ENSECRP00000027282	annotation not available	annotation not available	0.577
ENSECRP00000018132	LOC114642709	ENSECRP00000018132	ENSECRP00000026211	annotation not available	Sorting nexin-13-like.	0.917
ENSECRP00000018132	ankmy2	ENSECRP00000018132	ENSECRP00000018398	annotation not available	Ankyrin repeat and MYND domain containing 2.	0.462
ENSECRP00000018132	snx12	ENSECRP00000018132	ENSECRP00000018019	annotation not available	Sorting nexin 12.	0.528
ENSECRP00000018132	snx14	ENSECRP00000018132	ENSECRP00000001130	annotation not available	Sorting nexin 14.	0.624
ENSECRP00000018132	snx3	ENSECRP00000018132	ENSECRP00000001357	annotation not available	Sorting nexin 3.	0.528
ENSECRP00000018132	stx10	ENSECRP00000018132	ENSECRP00000024966	annotation not available	Syntaxin 10.	0.485
ENSECRP00000018132	stx6	ENSECRP00000018132	ENSECRP00000012059	annotation not available	Syntaxin 6.	0.485
ENSECRP00000018132	stx8	ENSECRP00000018132	ENSECRP00000031333	annotation not available	Syntaxin 8.	0.501
ENSECRP00000018132	ykt6	ENSECRP00000018132	ENSECRP00000000560	annotation not available	YKT6 v-SNARE homolog.	0.539
ENSECRP00000027282	ENSECRP00000018132	ENSECRP00000027282	ENSECRP00000018132	annotation not available	annotation not available	0.577
ENSECRP00000027282	LOC114642709	ENSECRP00000027282	ENSECRP00000026211	annotation not available	Sorting nexin-13-like.	0.577
LOC114642709	ENSECRP00000018132	ENSECRP00000026211	ENSECRP00000018132	Sorting nexin-13-like.	annotation not available	0.917
LOC114642709	ENSECRP00000027282	ENSECRP00000026211	ENSECRP00000027282	Sorting nexin-13-like.	annotation not available	0.577
LOC114642709	ankmy2	ENSECRP00000026211	ENSECRP00000018398	Sorting nexin-13-like.	Ankyrin repeat and MYND domain containing 2.	0.462
LOC114642709	snx12	ENSECRP00000026211	ENSECRP00000018019	Sorting nexin-13-like.	Sorting nexin 12.	0.528
LOC114642709	snx14	ENSECRP00000026211	ENSECRP00000001130	Sorting nexin-13-like.	Sorting nexin 14.	0.624
LOC114642709	snx3	ENSECRP00000026211	ENSECRP00000001357	Sorting nexin-13-like.	Sorting nexin 3.	0.528
LOC114642709	stx10	ENSECRP00000026211	ENSECRP00000024966	Sorting nexin-13-like.	Syntaxin 10.	0.485
LOC114642709	stx6	ENSECRP00000026211	ENSECRP00000012059	Sorting nexin-13-like.	Syntaxin 6.	0.485