STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
txnl4bThioredoxin like 4B. (149 aa)    
Predicted Functional Partners:
sart1
Spliceosome associated factor 1, recruiter of U4/U6.U5 tri-snRNP.
    
 0.996
snrnp200
Small nuclear ribonucleoprotein U5 subunit 200.
    
 0.996
prpf6
pre-mRNA processing factor 6.
    
 0.996
prpf31
pre-mRNA processing factor 31.
    
 0.996
snrpd3
Small nuclear ribonucleoprotein D3 polypeptide.
   
  0.996
prpf8
pre-mRNA processing factor 8.
    
 0.995
eftud2
Elongation factor Tu GTP binding domain containing 2.
    
 0.995
snrpg
Small nuclear ribonucleoprotein polypeptide G.
   
 0.994
lsm6
LSM6 homolog, U6 small nuclear RNA and mRNA degradation associated.
   
 0.994
lsm8
LSM8 homolog, U6 small nuclear RNA associated.
   
 0.994
Your Current Organism:
Erpetoichthys calabaricus
NCBI taxonomy Id: 27687
Other names: Calamoichthys calabaricus, E. calabaricus, reedfish
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.