STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ist1IST1 factor associated with ESCRT-III. (352 aa)    
Predicted Functional Partners:
vps4b
Vacuolar protein sorting 4 homolog B.
   
 0.979
vta1
Vesicle trafficking 1.
   
 
 0.979
vps4a
Vacuolar protein sorting 4 homolog A.
   
 0.979
chmp5
Charged multivesicular body protein 5.
    
 
 0.974
chmp2a
Charged multivesicular body protein 2A.
    
 0.967
chmp1b
Charged multivesicular body protein 1B.
    
 
 0.962
LOC114653197
Charged multivesicular body protein 4c-like.
    
 0.954
chmp4b
Charged multivesicular body protein 4B.
    
 0.954
chmp1a
Charged multivesicular body protein 1A.
    
 
 0.954
LOC114651694-2
Charged multivesicular body protein 3.
    
 0.953
Your Current Organism:
Erpetoichthys calabaricus
NCBI taxonomy Id: 27687
Other names: Calamoichthys calabaricus, E. calabaricus, reedfish
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.