STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
trmt10ctRNA methyltransferase 10C, mitochondrial RNase P subunit. (443 aa)    
Predicted Functional Partners:
hsd17b10
Hydroxysteroid 17-beta dehydrogenase 10.
    
 0.998
prorp
Protein only RNase P catalytic subunit.
   
 0.998
wdr4
WD repeat domain 4.
   
 0.978
trmt6
tRNA methyltransferase 6.
   
 
 0.976
trmt61a
tRNA methyltransferase 61A.
   
 0.976
trmt61b
tRNA methyltransferase 61B.
   
 0.973
rpp30
Ribonuclease P/MRP subunit p30.
   
 
 0.944
ENSECRP00000020973
annotation not available
   
 
 0.944
pop4
POP4 homolog, ribonuclease P/MRP subunit.
   
 
  0.938
drosha
Drosha ribonuclease III.
     
 0.937
Your Current Organism:
Erpetoichthys calabaricus
NCBI taxonomy Id: 27687
Other names: Calamoichthys calabaricus, E. calabaricus, reedfish
Server load: low (26%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.