STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
tanc2Tetratricopeptide repeat, ankyrin repeat and coiled-coil containing 2. (2067 aa)    
Predicted Functional Partners:
leo1
LEO1 homolog, Paf1/RNA polymerase II complex component.
    
 0.776
ppp6c
Protein phosphatase 6 catalytic subunit.
   
 0.728
rps3
Ribosomal protein S3.
    
 0.653
ift81
Intraflagellar transport 81.
    
 0.649
mars1
methionyl-tRNA synthetase 1.
   
 0.624
ift22
Intraflagellar transport 22.
    
 0.618
ift88
Intraflagellar transport 88.
   
 0.616
ikbkb
Inhibitor of nuclear factor kappa B kinase subunit beta.
   
 0.615
chuk
Component of inhibitor of nuclear factor kappa B kinase complex.
   
 0.615
relb
RELB proto-oncogene, NF-kB subunit.
   
 0.611
Your Current Organism:
Erpetoichthys calabaricus
NCBI taxonomy Id: 27687
Other names: Calamoichthys calabaricus, E. calabaricus, reedfish
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.