STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
scnn1bSodium channel epithelial 1 beta subunit. (641 aa)    
Predicted Functional Partners:
scnn1g
Sodium channel epithelial 1 gamma subunit.
  
0.978
nedd4l
NEDD4 like E3 ubiquitin protein ligase.
    
 0.915
nedd4
NEDD4 E3 ubiquitin protein ligase.
    
 0.915
scn2b
Sodium voltage-gated channel beta subunit 2.
     
 0.841
scn1b
Sodium voltage-gated channel beta subunit 1.
     
 0.810
scn3b
Sodium voltage-gated channel beta subunit 3.
     
 0.787
LOC114664762
Sodium channel protein type 4 subunit alpha A-like.
     
 0.782
scn4b
Sodium voltage-gated channel beta subunit 4.
     
 0.776
trpm5
Transient receptor potential cation channel subfamily M member 5.
     
 0.742
LOC114660707
Transient receptor potential cation channel subfamily M member 4-like.
     
 0.742
Your Current Organism:
Erpetoichthys calabaricus
NCBI taxonomy Id: 27687
Other names: Calamoichthys calabaricus, E. calabaricus, reedfish
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.