STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
lcatLecithin-cholesterol acyltransferase. (423 aa)    
Predicted Functional Partners:
LOC114667284
Apolipoprotein A-IV-like.
   
 0.987
apob
Apolipoprotein B.
   
 
 0.970
cetp
Cholesteryl ester transfer protein.
   
 
 0.968
pltp
Phospholipid transfer protein.
     
 0.959
lipc
Lipase C, hepatic type.
     
 0.957
apoh
Apolipoprotein H.
   
 
 0.941
pemt
Phosphatidylethanolamine N-methyltransferase.
   
 0.924
mboat2
Membrane bound O-acyltransferase domain containing 2.
     
 0.893
ENSECRP00000001097
annotation not available
   
 0.881
LOC114656901
Apolipoprotein A-I-like.
   
 0.881
Your Current Organism:
Erpetoichthys calabaricus
NCBI taxonomy Id: 27687
Other names: Calamoichthys calabaricus, E. calabaricus, reedfish
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.