STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
atxn1lAtaxin 1 like. (790 aa)    
Predicted Functional Partners:
LOC114659363
Uncharacterized LOC114659363.
  
 
0.908
rbpj
Recombination signal binding protein for immunoglobulin kappa J region.
    
 0.888
rbpjl
Recombination signal binding protein for immunoglobulin kappa J region like.
    
 0.877
cic
Capicua transcriptional repressor.
    
 
 0.778
ist1
IST1 factor associated with ESCRT-III.
 
  
 0.735
kat5
Lysine acetyltransferase 5.
    
 0.712
kat8
Lysine acetyltransferase 8.
    
 0.712
kat7
Lysine acetyltransferase 7.
    
 0.712
kat6b
Lysine acetyltransferase 6B.
    
 0.712
ENSECRP00000002201
annotation not available
     
 0.704
Your Current Organism:
Erpetoichthys calabaricus
NCBI taxonomy Id: 27687
Other names: Calamoichthys calabaricus, E. calabaricus, reedfish
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.