STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
acbd4acyl-CoA binding domain containing 4. (327 aa)    
Predicted Functional Partners:
pex14
Peroxisomal biogenesis factor 14.
   
 0.754
pex16
Peroxisomal biogenesis factor 16.
   
 0.729
acox1
acyl-CoA oxidase 1.
  
 0.716
pex3
Peroxisomal biogenesis factor 3.
    
 0.701
acox3
acyl-CoA oxidase 3, pristanoyl.
  
 0.688
ENSECRP00000027170
annotation not available
   
 0.680
pex13
Peroxisomal biogenesis factor 13.
   
 0.680
abcd3
ATP binding cassette subfamily D member 3.
  
 
 0.677
hadhb
hydroxyacyl-CoA dehydrogenase trifunctional multienzyme complex subunit beta.
  
 
 0.673
pex19
Peroxisomal biogenesis factor 19.
     
 0.673
Your Current Organism:
Erpetoichthys calabaricus
NCBI taxonomy Id: 27687
Other names: Calamoichthys calabaricus, E. calabaricus, reedfish
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