STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
prrx1Paired related homeobox 1. (245 aa)    
Predicted Functional Partners:
srf
Serum response factor.
    
 0.895
arx
Aristaless related homeobox.
     
0.823
ENSECRP00000016513
annotation not available
     
0.816
ldb1
LIM domain binding 1.
    
 0.616
ldb2
LIM domain binding 2.
    
 0.616
znf366
Zinc finger protein 366.
    
 
 0.573
hhex
Hematopoietically expressed homeobox.
      
 0.558
lhx4
LIM homeobox 4.
   
0.547
lhx3
LIM homeobox 3.
   
 0.547
ENSECRP00000012072
annotation not available
    
 
 0.523
Your Current Organism:
Erpetoichthys calabaricus
NCBI taxonomy Id: 27687
Other names: Calamoichthys calabaricus, E. calabaricus, reedfish
Server load: low (18%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.