STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
nfrkbNuclear factor related to kappaB binding protein. (1300 aa)    
Predicted Functional Partners:
actr5
Actin related protein 5.
   
 0.998
ino80e
INO80 complex subunit E.
    
 0.997
uchl5
Ubiquitin C-terminal hydrolase L5.
    
 0.993
ino80
INO80 complex ATPase subunit.
   
 0.993
mcrs1
Microspherule protein 1.
    
 0.985
actr8
Actin related protein 8.
   
 0.984
ruvbl1
RuvB like AAA ATPase 1.
    
 0.984
yy1
YY1 transcription factor.
    
 0.975
ino80c
INO80 complex subunit C.
    
 0.973
tfpt
TCF3 fusion partner.
    
 0.971
Your Current Organism:
Erpetoichthys calabaricus
NCBI taxonomy Id: 27687
Other names: Calamoichthys calabaricus, E. calabaricus, reedfish
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.