STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ddx6DEAD-box helicase 6. (487 aa)    
Predicted Functional Partners:
eif4enif1
Eukaryotic translation initiation factor 4E nuclear import factor 1.
  
 0.987
edc3
Enhancer of mRNA decapping 3.
   
 0.983
lsm1
LSM1 homolog, mRNA degradation associated.
   
 0.982
lsm14a
LSM14A mRNA processing body assembly factor.
   
 0.981
lsm7
LSM7 homolog, U6 small nuclear RNA and mRNA degradation associated.
    
 0.981
lsm14b
LSM family member 14B.
   
 0.977
dcp2
Decapping mRNA 2.
   
 0.975
dcp1a
Decapping mRNA 1A.
   
 0.962
dcp1b
Decapping mRNA 1B.
   
 0.958
cnot4
CCR4-NOT transcription complex subunit 4.
    
 0.955
Your Current Organism:
Erpetoichthys calabaricus
NCBI taxonomy Id: 27687
Other names: Calamoichthys calabaricus, E. calabaricus, reedfish
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.