STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC114666747Cytochrome c oxidase assembly protein COX16 homolog, mitochondrial. (108 aa)    
Predicted Functional Partners:
gatb
glutamyl-tRNA amidotransferase subunit B.
    
  0.770
usp30
Ubiquitin specific peptidase 30.
    
  0.643
tomm20
Translocase of outer mitochondrial membrane 20.
   
 
 0.578
fkbp8
FKBP prolyl isomerase 8.
    
  0.568
LOC114655328
Cytochrome c.
   
 
 0.560
LOC114655093
Cytochrome c, somatic.
   
 
 0.560
tmem14c
Transmembrane protein 14C.
   
  
 0.512
nup155
Nucleoporin 155.
    
  0.482
ENSECRP00000026022
annotation not available
    
  0.482
LOC114654545
Cytochrome c oxidase assembly factor 6 homolog.
   
  
 0.471
Your Current Organism:
Erpetoichthys calabaricus
NCBI taxonomy Id: 27687
Other names: Calamoichthys calabaricus, E. calabaricus, reedfish
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.