STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
spns2Sphingolipid transporter 2. (508 aa)    
Predicted Functional Partners:
sgpp1
Sphingosine-1-phosphate phosphatase 1.
    
 0.622
ugcg
UDP-glucose ceramide glucosyltransferase.
     
 0.613
mrps11
Mitochondrial ribosomal protein S11.
    
 0.607
gba2
Glucosylceramidase beta 2.
    
 0.600
mrps10
Mitochondrial ribosomal protein S10.
    
 0.598
sgpp2
Sphingosine-1-phosphate phosphatase 2.
    
 0.596
rbm8a
RNA binding motif protein 8A.
    
 0.594
magoh
Mago homolog, exon junction complex subunit.
    
 0.594
ENSECRP00000032893
annotation not available
     
 0.593
rpl23
Ribosomal protein L23.
    
 0.590
Your Current Organism:
Erpetoichthys calabaricus
NCBI taxonomy Id: 27687
Other names: Calamoichthys calabaricus, E. calabaricus, reedfish
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.