STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ddhd1DDHD domain containing 1. (820 aa)    
Predicted Functional Partners:
sec13
SEC13 homolog, nuclear pore and COPII coat complex component.
    
 0.770
sec31a
SEC31 homolog A, COPII coat complex component.
    
 0.760
sec31b
SEC31 homolog B, COPII coat complex component.
    
 0.760
LOC114665544
Protein transport protein Sec23A.
   
 0.741
sec23a
Sec23 homolog A, coat complex II component.
   
 0.741
ankrd40
Ankyrin repeat domain 40.
    
 0.725
LOC114642651
Circularly permutated Ras protein 1-like.
   
 0.699
ddhd2
DDHD domain containing 2.
   
 
0.657
sec23ip
SEC23 interacting protein.
   
 
0.657
LOC114660259
GTP-binding protein SAR1a.
     
 0.647
Your Current Organism:
Erpetoichthys calabaricus
NCBI taxonomy Id: 27687
Other names: Calamoichthys calabaricus, E. calabaricus, reedfish
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