STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC114664329Protein tyrosine phosphatase type IVA 2-like. (171 aa)    
Predicted Functional Partners:
taf12
TATA-box binding protein associated factor 12.
     
 0.793
rabggtb
Rab geranylgeranyltransferase subunit beta.
    
 0.755
eny2
ENY2 transcription and export complex 2 subunit.
   
 
  0.738
taf6
TATA-box binding protein associated factor 6.
     
 0.660
taf6l
TATA-box binding protein associated factor 6 like.
     
 0.617
cnnm3
Cyclin and CBS domain divalent metal cation transport mediator 3.
    
 
 0.598
LOC114648552
Metal transporter CNNM4-like.
    
 
 0.598
cnnm1
Cyclin and CBS domain divalent metal cation transport mediator 1.
    
 
 0.598
csnk2b
Casein kinase 2 beta.
   
 
  0.598
cnnm2
Cyclin and CBS domain divalent metal cation transport mediator 2.
    
 
 0.598
Your Current Organism:
Erpetoichthys calabaricus
NCBI taxonomy Id: 27687
Other names: Calamoichthys calabaricus, E. calabaricus, reedfish
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.