STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC114647870LHFPL tetraspan subfamily member 5 protein-like. (214 aa)    
Predicted Functional Partners:
pcdh15
Protocadherin related 15.
   
 0.800
ENSECRP00000013643
annotation not available
     
 0.631
LOC114652850
Transmembrane channel-like protein 1.
   
 
 0.626
ENSECRP00000018737
annotation not available
   
 0.578
ENSECRP00000021915
annotation not available
   
 
 0.570
cib2
Calcium and integrin binding family member 2.
   
 
 0.570
LOC114653209
Cadherin-7-like.
   
 0.475
cdh11
Cadherin 11.
   
 0.475
cdh8
Cadherin 8.
   
 0.475
LOC114657789
Neural-cadherin-like.
   
 0.467
Your Current Organism:
Erpetoichthys calabaricus
NCBI taxonomy Id: 27687
Other names: Calamoichthys calabaricus, E. calabaricus, reedfish
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