STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
mto1Mitochondrial tRNA translation optimization 1. (665 aa)    
Predicted Functional Partners:
gtpbp3
GTP binding protein 3, mitochondrial.
 0.994
trmu
tRNA 5-methylaminomethyl-2-thiouridylate methyltransferase.
  
 0.901
vps45
Vacuolar protein sorting 45 homolog.
 
      0.900
gtse1
G2 and S-phase expressed 1.
  
 0.872
LOC114650119
Probable cysteine--tRNA ligase, mitochondrial.
  
  
 0.789
med17
Mediator complex subunit 17.
   
 
  0.724
ccdc47
Coiled-coil domain containing 47.
   
 
  0.712
supt7l
SPT7 like, STAGA complex gamma subunit.
   
  
 0.643
mtfmt
Mitochondrial methionyl-tRNA formyltransferase.
  
  
 0.639
pipox
Pipecolic acid and sarcosine oxidase.
     
 0.625
Your Current Organism:
Erpetoichthys calabaricus
NCBI taxonomy Id: 27687
Other names: Calamoichthys calabaricus, E. calabaricus, reedfish
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.