STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
rexo4REX4 homolog, 3'-5' exonuclease. (406 aa)    
Predicted Functional Partners:
pan3
poly(A) specific ribonuclease subunit PAN3.
    
 0.921
wdr18
WD repeat domain 18.
  
  0.920
LOC114648872
Proliferating cell nuclear antigen.
  
 0.898
ddx55
DEAD-box helicase 55.
  
 0.890
rbm34
RNA binding motif protein 34.
   
 0.856
rexo2
RNA exonuclease 2.
  
 0.855
imp4
IMP U3 small nucleolar ribonucleoprotein 4.
   
   0.852
utp23
UTP23 small subunit processome component.
   
   0.846
trmt61a
tRNA methyltransferase 61A.
   
   0.845
dnttip2
Deoxynucleotidyltransferase terminal interacting protein 2.
   
    0.839
Your Current Organism:
Erpetoichthys calabaricus
NCBI taxonomy Id: 27687
Other names: Calamoichthys calabaricus, E. calabaricus, reedfish
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.