STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC114650397Cohesin subunit SA-2-like. (1196 aa)    
Predicted Functional Partners:
smc1a
Structural maintenance of chromosomes 1A.
   
 0.987
smc3
Structural maintenance of chromosomes 3.
   
 0.982
ENSECRP00000019751
annotation not available
   
 0.971
rad21
RAD21 cohesin complex component.
   
 0.971
nipbl
NIPBL cohesin loading factor.
   
 0.960
pds5b
PDS5 cohesin associated factor B.
   
 0.927
ENSECRP00000005298
annotation not available
   
 0.927
espl1
Extra spindle pole bodies like 1, separase.
    
 0.910
smc6
Structural maintenance of chromosomes 6.
   
 0.897
smc5
Structural maintenance of chromosomes 5.
   
 0.889
Your Current Organism:
Erpetoichthys calabaricus
NCBI taxonomy Id: 27687
Other names: Calamoichthys calabaricus, E. calabaricus, reedfish
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.